514,(1) •
ADF&G(1) •
Correlation(2) •
DESeq2(3) •
DESeq2,(7) •
DNA(2) •
GO(1) •
GO MWU(8) •
GO MWU,(1) •
IDs(1) •
Jupyter(4) •
Kallisto(4) •
PCA(1) •
PCAs,(2) •
QERM(1) •
Trinity,(2) •
Ubuntu(5) •
Variable(2) •
WGCNA(2) •
WGCNA,(4) •
WordPress(1) •
archived(1) •
cbai_transcriptomev2.0,(3) •
cbai_transcriptomev4.0,(1) •
clustering(5) •
deseq2,(1) •
design,(1) •
ecology,(1) •
extraction(2) •
genes(1) •
genes,(2) •
goals,(2) •
hemat_transcriptomev1.6,(1) •
hematodinium(7) •
hematodinium,(7) •
immune(3) •
immune,(1) •
in(1) •
interview(1) •
interview,(1) •
kallisto,(4) •
linear(2) •
literature(1) •
manual(3) •
modeling(2) •
modules(1) •
notes(2) •
overview,(3) •
pathology,(1) •
planning(1) •
plasticity(1) •
project(1) •
protocol(1) •
samples,(1) •
taxa(2) •
vitro(1) •
writeup(13)
514, 1
- Using Linear Modeling on Hematodinium • June 9, 2021
ADF&G 1
- Jensen Samples • August 30, 2021
Correlation 2
- Correlating Crab Variables • September 17, 2021
- Correlating Crab Variables, Fixed • September 27, 2021
DESeq2 3
- Creating PCAs • July 19, 2021
- December Goals • December 1, 2021
- Doing It All • November 17, 2021
DESeq2, 7
- Adding Individual Libraries • December 17, 2020
- Back to Square One? • February 9, 2021
- Day 0 Ambient vs. Day 17 Ambient • December 18, 2020
- Ditching full genomes, using hematodinium transcriptomev1.6 • March 16, 2021
- Immune Genes • August 18, 2021
- Lists of Differentially-Expressed Genes (plus graphs) • December 19, 2020
- Using C. bairdi transcriptome v4.0 • April 8, 2021
DNA 2
- DNA Extraction Results • March 16, 2022
- Extracting DNA from Archived Samples • March 14, 2022
GO 1
- GO terms and Venn Diagrams • December 21, 2020
GO MWU 8
- Back to Square One? • February 9, 2021
- Completed GO-MWU for new analyses • February 10, 2021
- Ditching full genomes, using hematodinium transcriptomev1.6 • March 16, 2021
- Fixing GO-MWU • November 8, 2021
- GO-MWU Wrapup + Future Plans • February 16, 2021
- Starting GO-MWU • February 1, 2021
- Using C. bairdi transcriptome v4.0 • April 8, 2021
- Workflow Standardization • January 20, 2021
GO MWU, 1
- Doing It All • November 17, 2021
IDs 1
- GO terms and Venn Diagrams • December 21, 2020
Jupyter 4
- Getting A Grep On Things • September 23, 2020
- Orientation 2, This Time It's CoE-ier • September 24, 2020
- Orientation! • September 24, 2020
- Probing Jupyter • September 22, 2020
Kallisto 4
- Adding Individual Libraries • December 17, 2020
- Day 0 Ambient vs. Day 17 Ambient • December 18, 2020
- Lists of Differentially-Expressed Genes (plus graphs) • December 19, 2020
- Starting Kallisto • December 9, 2020
PCA 1
- Immune Genes • August 18, 2021
PCAs, 2
- Crab Plasticity • August 4, 2021
- Creating PCAs • July 19, 2021
QERM 1
- Using Linear Modeling on Hematodinium • June 9, 2021
Trinity, 2
- Starting Kallisto • December 9, 2020
- TRINITY Pipeline Update • November 29, 2020
Ubuntu 5
- Getting A Grep On Things • September 23, 2020
- He-Mat and the Masters of the Database • September 21, 2020
- Orientation 2, This Time It's CoE-ier • September 24, 2020
- Orientation! • September 24, 2020
- Probing Jupyter • September 22, 2020
Variable 2
- Correlating Crab Variables • September 17, 2021
- Correlating Crab Variables, Fixed • September 27, 2021
WGCNA 2
- Figuring Out WGCNA, Part 1 • April 13, 2021
- Figuring Out WGCNA, Part 2 • April 30, 2021
WGCNA, 4
- December Goals • December 1, 2021
- Doing It All • November 17, 2021
- Manual Clustering • May 19, 2021
- WGCNA Part 3 • June 18, 2021
WordPress 1
- WordPress Management • June 9, 2021
archived 1
- Jensen Samples • August 30, 2021
cbai_transcriptomev2.0, 3
- Figuring Out WGCNA, Part 1 • April 13, 2021
- Figuring Out WGCNA, Part 2 • April 30, 2021
- Manual Clustering • May 19, 2021
cbai_transcriptomev4.0, 1
- Using C. bairdi transcriptome v4.0 • April 8, 2021
clustering 5
- Manual Clustering • May 19, 2021
- Manual Clustering 2 • June 9, 2021
- Manual Modules 3 • July 12, 2021
- Manual Modules 4 • August 9, 2021
- Manually Clustering Immune Genes • August 23, 2021
deseq2, 1
- Workflow Standardization • January 20, 2021
design, 1
- Project Proposal Idea • January 19, 2021
ecology, 1
- Chatting with Pam Jensen • October 27, 2021
extraction 2
- DNA Extraction Results • March 16, 2022
- Extracting DNA from Archived Samples • March 14, 2022
genes 1
- Adaptive Immune Gene Dive • September 9, 2021
genes, 2
- Immune Genes • August 18, 2021
- Manually Clustering Immune Genes • August 23, 2021
goals, 2
- December Goals • December 1, 2021
- WGCNA 4 • December 1, 2021
hemat_transcriptomev1.6, 1
- Ditching full genomes, using hematodinium transcriptomev1.6 • March 16, 2021
hematodinium 7
- Getting A Grep On Things • September 23, 2020
- He-Mat and the Masters of the Database • September 21, 2020
- Orientation 2, This Time It's CoE-ier • September 24, 2020
- Orientation! • September 24, 2020
- Probing Jupyter • September 22, 2020
- Reading Update and Research Plans • November 18, 2020
- WGCNA 4 • December 1, 2021
hematodinium, 7
- Adding Individual Libraries • December 17, 2020
- Day 0 Ambient vs. Day 17 Ambient • December 18, 2020
- December Goals • December 1, 2021
- GO terms and Venn Diagrams • December 21, 2020
- Lists of Differentially-Expressed Genes (plus graphs) • December 19, 2020
- Starting Kallisto • December 9, 2020
- TRINITY Pipeline Update • November 29, 2020
immune 3
- Adaptive Immune Gene Dive • September 9, 2021
- Immune Genes • August 18, 2021
- Manually Clustering Immune Genes • August 23, 2021
immune, 1
- Bairdi Immune Genes Lit Search • October 28, 2021
in 1
- Project Proposal Idea • January 19, 2021
interview 1
- Background Info on Grace's Research • October 11, 2020
interview, 1
- Chatting with Pam Jensen • October 27, 2021
kallisto, 4
- Back to Square One? • February 9, 2021
- Creating PCAs • July 19, 2021
- Ditching full genomes, using hematodinium transcriptomev1.6 • March 16, 2021
- Using C. bairdi transcriptome v4.0 • April 8, 2021
linear 2
- Linear Modeling, for real • September 9, 2021
- Using Linear Modeling on Hematodinium • June 9, 2021
literature 1
- Bairdi Immune Genes Lit Search • October 28, 2021
manual 3
- Manual Clustering 2 • June 9, 2021
- Manual Modules 3 • July 12, 2021
- Manual Modules 4 • August 9, 2021
modeling 2
- Linear Modeling, for real • September 9, 2021
- Using Linear Modeling on Hematodinium • June 9, 2021
modules 1
- WGCNA Part 3 • June 18, 2021
notes 2
- Reading Update and Research Plans • November 18, 2020
- TRINITY Pipeline Update • November 29, 2020
overview, 3
- Determining Taxa of DEGs • February 23, 2021
- GO-MWU Wrapup + Future Plans • February 16, 2021
- Using NCBI Genomes • March 3, 2021
pathology, 1
- Chatting with Pam Jensen • October 27, 2021
planning 1
- Reading Update and Research Plans • November 18, 2020
plasticity 1
- Crab Plasticity • August 4, 2021
project 1
- Project Proposal Idea • January 19, 2021
protocol 1
- Chatting with Pam Jensen • October 27, 2021
samples, 1
- Jensen Samples • August 30, 2021
taxa 2
- Determining Taxa of DEGs • February 23, 2021
- Using NCBI Genomes • March 3, 2021
vitro 1
- Project Proposal Idea • January 19, 2021
writeup 13
- August Summary • August 1, 2022
- December Summary • December 5, 2022
- January Summary • January 3, 2024
- January Summary • January 5, 2023
- July Summary • July 12, 2022
- June Summary • June 23, 2022
- November Summary • November 1, 2024
- November Summary • November 23, 2022
- October Summary • October 1, 2024
- October Summary • October 2, 2023
- September Summary • September 18, 2024
- September Summary • September 19, 2023
- September Summary • September 1, 2022